If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ), 'gf_id' => 'HOM05D000853', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000853' ), 'data_identifier' => 'HOM05D000853', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000853', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p28530' => 'bna', 'A05p36760' => 'bna', 'A06p09740' => 'bna', 'A07p01790' => 'bna', 'A07p26900' => 'bna', 'A07p40700' => 'bna', 'A07p44830' => 'bna', 'A08p31440' => 'bna', 'A09p61070' => 'bna', 'Aa31LG1G1300' => 'aar', 'Aa31LG1G19300' => 'aar', 'Aa31LG3G13770' => 'aar', 'Aa31LG4G1120' => 'aar', 'Aa31LG4G5290' => 'aar', 'Aa31LG7G550' => 'aar', 'Aa31LG9G8500' => 'aar', 'Actinidia04299' => 'ach', 'Actinidia08944' => 'ach', 'Actinidia18246' => 'ach', 'Actinidia18247' => 'ach', 'Actinidia24042' => 'ach', 'Actinidia29836' => 'ach', 'Actinidia31924' => 'ach', 'Actinidia36876' => 'ach', 'Actinidia38020' => 'ach', 'Actinidia38323' => 'ach', 'Ah.01g006940' => 'amhyb', 'Ah.03g137450' => 'amhyb', 'Ah.12g056230' => 'amhyb', 'AL1G25420' => 'aly', 'AL1G28130' => 'aly', 'AL2G34980' => 'aly', 'AL2G40540' => 'aly', 'AL3G24390' => 'aly', 'AL8G14860' => 'aly', 'AL8G34050' => 'aly', 'Aqoxy1G01363' => 'aox', 'Aqoxy3G00563' => 'aox', 'Aqoxy6G01027' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15A7AE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T7DN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8BYJ1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B4HKF3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA09C8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ENQE7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FPJ31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4VJTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMHM2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GX19PR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N974ZF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P86FK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMYN8D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX8KDE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2YUTZ' => 'arhy', 'AT1G13635' => 'ath', 'AT1G15970' => 'ath', 'AT1G75090' => 'ath', 'AT1G80850' => 'ath', 'AT3G12710' => 'ath', 'AT5G44680' => 'ath', 'AT5G57970' => 'ath', 'ATR0691G238' => 'atr', 'ATR0739G120' => 'atr', 'ATR0763G038' => 'atr', 'Atru.chr1.18' => 'acertr', 'Atru.chr10.242' => 'acertr', 'Atru.chr11.1546' => 'acertr', 'Atru.chr13.535' => 'acertr', 'Atru.chr7.52' => 'acertr', 'AUR62003050' => 'cqu', 'AUR62007861' => 'cqu', 'AUR62026997' => 'cqu', 'AUR62030837' => 'cqu', 'AUR62037652' => 'cqu', 'BcaB02g06460' => 'bca', 'BcaB02g07243' => 'bca', 'BcaB03g13050' => 'bca', 'BcaB03g14510' => 'bca', 'BcaB05g22793' => 'bca', 'BcaB06g25519' => 'bca', 'BcaB07g30504' => 'bca', 'BcaC03g16687' => 'bca', 'BcaC05g25270' => 'bca', 'BcaC05g25616' => 'bca', 'BcaC05g29244' => 'bca', 'BcaC07g38800' => 'bca', 'BcaC08g45344' => 'bca', 'BcaC08g46940' => 'bca', 'BcaC08g46973' => 'bca', 'BcaC08g47539' => 'bca', 'BcaC09g48257' => 'bca', 'BcaC09g49352' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00240' => 'bna', 'BolC1t05184H' => 'bol', 'BolC2t08545H' => 'bol', 'BolC2t10556H' => 'bol', 'BolC5t29897H' => 'bol', 'BolC5t34188H' => 'bol', 'BolC6t38123H' => 'bol', 'BolC6t39944H' => 'bol', 'BolC6t40381H' => 'bol', 'BolC8t49362H' => 'bol', 'BolC8t52012H' => 'bol', 'BraA01t04113Z' => 'bra', 'BraA02t07889Z' => 'bra', 'BraA05t22479Z' => 'bra', 'BraA06t24163Z' => 'bra', 'BraA07t30335Z' => 'bra', 'BraA07t31614Z' => 'bra', 'BraA07t31990Z' => 'bra', 'BraA08t35066Z' => 'bra', 'BraA09t41480Z' => 'bra', 'C01p52460' => 'bna', 'C02p24330' => 'bna', 'C02p45260' => 'bna', 'C05p11440' => 'bna', 'C05p55200' => 'bna', 'C06p29580' => 'bna', 'C06p49100' => 'bna', 'C06p53640' => 'bna', 'C08p17360' => 'bna', 'C08p44660' => 'bna', 'C09p47530' => 'bna', 'CAN.G105.23' => 'can', 'CAN.G1126.23' => 'can', 'CAN.G1160.9' => 'can', 'CAN.G1864.1' => 'can', 'CAN.G407.65' => 'can', 'CAN.G551.42' => 'can', 'CAN.G680.11' => 'can', 'CAN.G809.18' => 'can', 'CANSAT11G1681' => 'cansat', 'CANSAT25G2114' => 'cansat', 'CANSAT35G1089' => 'cansat', 'CANSAT56G2971' => 'cansat', 'CANSAT56G3876' => 'cansat', 'CANSAT64G0078' => 'cansat', 'CARHR014010' => 'chi', 'CARHR016470' => 'chi', 'CARHR068410' => 'chi', 'CARHR073620' => 'chi', 'CARHR087230' => 'chi', 'CARHR178210' => 'chi', 'CARHR271750' => 'chi', 'Carub.0001s1336' => 'cru', 'Carub.0001s1577' => 'cru', 'Carub.0002s2187' => 'cru', 'Carub.0002s2669' => 'cru', 'Carub.0003s1207' => 'cru', 'Carub.0008s0358' => 'cru', 'Carub.0008s1850' => 'cru', 'Ca_03386_v3' => 'car', 'Ca_15524_v3' => 'car', 'Ca_20543_v3' => 'car', 'Ca_21126_v3' => 'car', 'Ca_22866_v3' => 'car', 'Ca_22948_v3' => 'car', 'Ca_28899_v3' => 'car', 'Ca_29107_v3' => 'car', 'Cc04_g05090' => 'ccan', 'Cc06_g15000' => 'ccan', 'Cc09_g04660' => 'ccan', 'Cc10_g03280' => 'ccan', 'Cc11_g11470' => 'ccan', 'CDE01G0161' => 'cde', 'CDE02G0619' => 'cde', 'CDE02G3913' => 'cde', 'CDE05G0045' => 'cde', 'CDE05G2821' => 'cde', 'CDE06G1808' => 'cde', 'Cfa001159' => 'cfa', 'Cfa008840' => 'cfa', 'Cfa017770' => 'cfa', 'Cfa018436' => 'cfa', 'Cfa020827' => 'cfa', 'Ciclev10001864m.g' => 'ccl', 'Ciclev10005040m.g' => 'ccl', 'Ciclev10008612m.g' => 'ccl', 'Ciclev10015639m.g' => 'ccl', 'Ciclev10032151m.g' => 'ccl', 'CiPaw.02G162200' => 'cil', 'CiPaw.05G120800' => 'cil', 'CiPaw.15G073400' => 'cil', 'CiPaw.15G169000' => 'cil', 'CiPaw.16G079200' => 'cil', 'CiPaw.16G111200' => 'cil', 'ClCG02G018830' => 'cla', 'ClCG05G019180' => 'cla', 'ClCG05G023500' => 'cla', 'ClCG09G003330' => 'cla', 'COL.COLO4_18807' => 'col', 'COL.COLO4_25006' => 'col', 'COL.COLO4_26359' => 'col', 'COL.COLO4_26700' => 'col', 'COL.COLO4_27780' => 'col', 'COL.COLO4_27846' => 'col', 'Cpa.g.c27631.1' => 'cpa', 'Cpa.g.sc1.173' => 'cpa', 'Cpa.g.sc10.76' => 'cpa', 'Cpa.g.sc1974.1' => 'cpa', 'Cpa.g.sc46.153' => 'cpa', 'Cpa.g.sc64.56' => 'cpa', 'Cpa.g.sc64.57' => 'cpa', 'CsaV3_3G044900' => 'csa', 'CsaV3_5G033540' => 'csa', 'CsaV3_6G013350' => 'csa', 'CsaV3_7G031900' => 'csa', 'CSS0005478' => 'camsi', 'CSS0005887' => 'camsi', 'CSS0015204' => 'camsi', 'CSS0017462' => 'camsi', 'CSS0023942' => 'camsi', 'CSS0034656' => 'camsi', 'CSS0035591' => 'camsi', 'CSS0040372' => 'camsi', 'CSS0044885' => 'camsi', 'CSS0047731' => 'camsi', 'CSS0050032' => 'camsi', 'DCAR_003735' => 'dca', 'DCAR_004359' => 'dca', 'DCAR_004360' => 'dca', 'DCAR_016303' => 'dca', 'DCAR_019510' => 'dca', 'DCAR_021368' => 'dca', 'DCAR_023739' => 'dca', 'DCAR_025561' => 'dca', 'DCAR_026690' => 'dca', 'DCAR_032349' => 'dca', 'Dinv01261' => 'din', 'Dinv17883' => 'din', 'Dinv23285' => 'din', 'Dinv34012' => 'din', 'Dinv39388' => 'din', 'Dinv41381' => 'din', 'Dinv42453' => 'din', 'Dinv42857' => 'din', 'Dinv43243' => 'din', 'Duzib093G1034' => 'dzi', 'Duzib116G0187' => 'dzi', 'Duzib150G0545' => 'dzi', 'Duzib168G1773' => 'dzi', 'Duzib187G0610' => 'dzi', 'Duzib192G0295' => 'dzi', 'Duzib192G0444' => 'dzi', 'Duzib213G1043' => 'dzi', 'Duzib251G0038' => 'dzi', 'Duzib268G1383' => 'dzi', 'ECA232G0262' => 'eca', 'ECA234G3151' => 'eca', 'ECA238G0669' => 'eca', 'ECA240G3966' => 'eca', 'ECA246G0623' => 'eca', 'ECA246G4116' => 'eca', 'EL10Ac2g03243' => 'bvu', 'EL10Ac6g14661' => 'bvu', 'EL10Ac9g22208' => 'bvu', 'Eucgr.B03112' => 'egr', 'Eucgr.C00347' => 'egr', 'Eucgr.E04327' => 'egr', 'Eucgr.F01478' => 'egr', 'Eucgr.F01542' => 'egr', 'Eucgr.F03956' => 'egr', 'FAN07G0916' => 'fan', 'FAN07G1432' => 'fan', 'FAN11G2468' => 'fan', 'FAN11G3299' => 'fan', 'FAN12G1685' => 'fan', 'FAN15G0305' => 'fan', 'FAN16G1344' => 'fan', 'FAN16G1495' => 'fan', 'FAN17G2478' => 'fan', 'FAN20G0428' => 'fan', 'FAN21G1836' => 'fan', 'FAN21G2727' => 'fan', 'FAN22G2160' => 'fan', 'FAN23G0788' => 'fan', 'FAN25G1516' => 'fan', 'FAN25G2667' => 'fan', 'FAN26G3002' => 'fan', 'FAN27G1782' => 'fan', 'FAN28G2894' => 'fan', 'FvH4_1g00950' => 'fve', 'FvH4_2g40160' => 'fve', 'FvH4_3g13300' => 'fve', 'FvH4_3g13890' => 'fve', 'FvH4_4g29150' => 'fve', 'Glyma.01G082000' => 'gma', 'Glyma.02G123800' => 'gma', 'Glyma.02G203900' => 'gma', 'Glyma.03G079100' => 'gma', 'Glyma.04G033700' => 'gma', 'Glyma.06G033900' => 'gma', 'Glyma.06G219600' => 'gma', 'Glyma.07G023100' => 'gma', 'Glyma.08G162500' => 'gma', 'Glyma.08G218700' => 'gma', 'Glyma.08G232900' => 'gma', 'Glyma.08G263200' => 'gma', 'Glyma.15G217300' => 'gma', 'Glyma.15G265200' => 'gma', 'Glyma.17G073900' => 'gma', 'Gohir.A01G101000' => 'ghi', 'Gohir.A04G145300' => 'ghi', 'Gohir.A05G054900' => 'ghi', 'Gohir.A05G119400' => 'ghi', 'Gohir.A05G196200' => 'ghi', 'Gohir.A06G097500' => 'ghi', 'Gohir.A12G159000' => 'ghi', 'Gohir.A13G184100' => 'ghi', 'Gohir.D01G085500' => 'ghi', 'Gohir.D04G189800' => 'ghi', 'Gohir.D05G056100' => 'ghi', 'Gohir.D05G120400' => 'ghi', 'Gohir.D05G199300' => 'ghi', 'Gohir.D06G098200' => 'ghi', 'Gohir.D12G162200' => 'ghi', 'Gohir.D13G190200' => 'ghi', 'Gorai.002G111100' => 'gra', 'Gorai.008G174900' => 'gra', 'Gorai.009G057100' => 'gra', 'Gorai.009G123900' => 'gra', 'Gorai.009G204500' => 'gra', 'Gorai.010G113100' => 'gra', 'Gorai.012G185200' => 'gra', 'Gorai.013G216100' => 'gra', 'GSVIVG01009657001' => 'vvi', 'GSVIVG01010060001' => 'vvi', 'GSVIVG01010109001' => 'vvi', 'GSVIVG01015953001' => 'vvi', 'GSVIVG01023602001' => 'vvi', 'HanXRQChr03g0064911' => 'han', 'HanXRQChr05g0153771' => 'han', 'HanXRQChr07g0193461' => 'han', 'HanXRQChr08g0235861' => 'han', 'HanXRQChr12g0377361' => 'han', 'HanXRQChr16g0508561' => 'han', 'HanXRQChr16g0523871' => 'han', 'HanXRQChr16g0528581' => 'han', 'Haze_05192' => 'cav', 'Haze_11852' => 'cav', 'Haze_17629' => 'cav', 'Haze_18472' => 'cav', 'Haze_19207' => 'cav', 'Hma1.2p1_0023F.1_g014950' => 'hma', 'Hma1.2p1_0023F.1_g015000' => 'hma', 'Hma1.2p1_0135F.1_g061940' => 'hma', 'Hma1.2p1_0222F.1_g093540' => 'hma', 'HPP92_010340' => 'vpl', 'HPP92_012427' => 'vpl', 'HPP92_015873' => 'vpl', 'Hund00434' => 'sun', 'Hund06520' => 'sun', 'Hund12034' => 'sun', 'Lalb_Chr01g0015581' => 'lal', 'Lalb_Chr04g0264481' => 'lal', 'Lalb_Chr05g0228991' => 'lal', 'Lalb_Chr07g0179861' => 'lal', 'Lalb_Chr08g0245811' => 'lal', 'Lalb_Chr12g0198681' => 'lal', 'Lalb_Chr17g0341521' => 'lal', 'Lalb_Chr25g0284191' => 'lal', 'Lj1A1152T39' => 'lonja', 'Lj1g0003040' => 'lja', 'Lj3g0001545' => 'lja', 'Lj3g0013353' => 'lja', 'Lj3g0026944' => 'lja', 'Lj4A783T80' => 'lonja', 'Lj4g0001255' => 'lja', 'Lj5C80T14' => 'lonja', 'Lj6A773T127' => 'lonja', 'Lj6g0017650' => 'lja', 'Lj9A493T65' => 'lonja', 'Lj9C717T1' => 'lonja', 'Lsat_1_v5_gn_2_133781' => 'lsa', 'Lsat_1_v5_gn_2_59780' => 'lsa', 'Lsat_1_v5_gn_3_103621' => 'lsa', 'Lsat_1_v5_gn_4_122361' => 'lsa', 'Lsat_1_v5_gn_4_21020' => 'lsa', 'Lsat_1_v5_gn_5_8221' => 'lsa', 'Lsat_1_v5_gn_7_49801' => 'lsa', 'Manes.03G072600' => 'mes', 'Manes.04G102500' => 'mes', 'Manes.05G162900' => 'mes', 'Manes.06G078800' => 'mes', 'Manes.11G066600' => 'mes', 'Manes.14G091000' => 'mes', 'Manes.16G054900' => 'mes', 'Manes.16G060000' => 'mes', 'Manes.18G029500' => 'mes', 'Mapoly0022s0115' => 'mpo', 'MBI03_g26874_MAGBIO' => 'mbi', 'MBI05_g00088_MAGBIO' => 'mbi', 'MBI05_g32773_MAGBIO' => 'mbi', 'MBI06_g30295_MAGBIO' => 'mbi', 'MBI07_g10264_MAGBIO' => 'mbi', 'MBI08_g12650_MAGBIO' => 'mbi', 'MBI09_g08655_MAGBIO' => 'mbi', 'MBI09_g24465_MAGBIO' => 'mbi', 'MBI10_g04309_MAGBIO' => 'mbi', 'MBI12_g39869_MAGBIO' => 'mbi', 'MBI12_g43018_MAGBIO' => 'mbi', 'MBI13_g37856_MAGBIO' => 'mbi', 'MBI14_g38693_MAGBIO' => 'mbi', 'MBI14_g38694_MAGBIO' => 'mbi', 'MBI14_g44425_MAGBIO' => 'mbi', 'MBI15_g19324_MAGBIO' => 'mbi', 'MBI15_g22411_MAGBIO' => 'mbi', 'MBI15_g39486_MAGBIO' => 'mbi', 'MBI16_g17776_MAGBIO' => 'mbi', 'MBI16_g43111_MAGBIO' => 'mbi', 'MBI17_g18833_MAGBIO' => 'mbi', 'MBI17_g19044_MAGBIO' => 'mbi', 'MBI18_g15811_MAGBIO' => 'mbi', 'MBI18_g30009_MAGBIO' => 'mbi', 'MBI18_g36015_MAGBIO' => 'mbi', 'MBI19_g06162_MAGBIO' => 'mbi', 'MBI19_g21298_MAGBIO' => 'mbi', 'MD02G1007800' => 'mdo', 'MD05G1240400' => 'mdo', 'MD05G1243000' => 'mdo', 'MD08G1035300' => 'mdo', 'MD10G1218500' => 'mdo', 'MD10G1225100' => 'mdo', 'MD13G1055700' => 'mdo', 'MD16G1054800' => 'mdo', 'Medtr0009s0230' => 'mtr', 'Medtr2g063510' => 'mtr', 'Medtr3g111690' => 'mtr', 'Medtr4g007070' => 'mtr', 'Medtr4g130880' => 'mtr', 'Medtr6g052980' => 'mtr', 'Medtr8g066040' => 'mtr', 'Medtr8g447000' => 'mtr', 'MELO3C003879.2' => 'cme', 'MELO3C012172.2' => 'cme', 'MELO3C019611.2' => 'cme', 'MELO3C023466.2' => 'cme', 'MELO3C027337.2' => 'cme', 'Migut.C00691' => 'egut', 'Migut.D01125' => 'egut', 'Migut.I00694' => 'egut', 'Migut.L01156' => 'egut', 'Migut.M02033' => 'egut', 'MSTRG.11180' => 'ama', 'MSTRG.1295' => 'ama', 'MSTRG.16379' => 'ama', 'MSTRG.19647' => 'ama', 'MSTRG.22799' => 'ama', 'MSTRG.2285' => 'ama', 'Nitab4.5_0000110g0310' => 'nta', 'Nitab4.5_0000217g0070' => 'nta', 'Nitab4.5_0000259g0180' => 'nta', 'Nitab4.5_0000614g0060' => 'nta', 'Nitab4.5_0001071g0090' => 'nta', 'Nitab4.5_0001299g0080' => 'nta', 'Nitab4.5_0001571g0030' => 'nta', 'Nitab4.5_0001815g0060' => 'nta', 'Nitab4.5_0002315g0170' => 'nta', 'Nitab4.5_0002414g0130' => 'nta', 'Nitab4.5_0002568g0040' => 'nta', 'Nitab4.5_0002891g0010' => 'nta', 'Nitab4.5_0004786g0050' => 'nta', 'Nitab4.5_0005314g0010' => 'nta', 'Nitab4.5_0005653g0050' => 'nta', 'Nitab4.5_0008036g0010' => 'nta', 'Nitab4.5_0008265g0010' => 'nta', 'Nitab4.5_0011373g0010' => 'nta', 'Nitab4.5_0012161g0010' => 'nta', 'Nn2g12374' => 'nnu', 'Nn4g23556' => 'nnu', 'Nn5g29513' => 'nnu', 'Nn7g38419' => 'nnu', 'Nn8g39889' => 'nnu', 'Oeu005612.5' => 'oeu', 'Oeu010094.1' => 'oeu', 'Oeu021811.1' => 'oeu', 'Oeu024148.1' => 'oeu', 'Oeu027649.1' => 'oeu', 'Oeu027825.1' => 'oeu', 'Oeu027827.1' => 'oeu', 'Oeu028338.1' => 'oeu', 'Oeu046912.1' => 'oeu', 'Oeu051584.1' => 'oeu', 'Oeu052193.1' => 'oeu', 'Oeu055073.1' => 'oeu', 'Oeu055074.1' => 'oeu', 'Oeu056188.1' => 'oeu', 'Oeu060129.1' => 'oeu', 'Os01g0799500' => 'osa', 'Os04g0501200' => 'osa', 'Os06g0649800' => 'osa', 'Os08g0489300' => 'osa', 'Os09g0420300' => 'osa', 'Peaxi162Scf00057g00620' => 'pax', 'Peaxi162Scf00062g00222' => 'pax', 'Peaxi162Scf00188g01026' => 'pax', 'Peaxi162Scf00313g00066' => 'pax', 'Peaxi162Scf00326g00089' => 'pax', 'Peaxi162Scf00332g00543' => 'pax', 'Peaxi162Scf00401g00823' => 'pax', 'Peaxi162Scf00884g00011' => 'pax', 'PGR042G1096' => 'pgr', 'PGR083G1083' => 'pgr', 'PGR083G1440' => 'pgr', 'PGR102G0919' => 'pgr', 'PGR102G1482' => 'pgr', 'PGR102G3038' => 'pgr', 'PGSC0003DMG400001946' => 'stu', 'PGSC0003DMG400007902' => 'stu', 'PGSC0003DMG400011287' => 'stu', 'PGSC0003DMG400013631' => 'stu', 'PGSC0003DMG400019656' => 'stu', 'PGSC0003DMG400019819' => 'stu', 'PGSC0003DMG400027857' => 'stu', 'Phvul.003G035100' => 'pvu', 'Phvul.003G037100' => 'pvu', 'Phvul.003G156200' => 'pvu', 'Phvul.005G045900' => 'pvu', 'Phvul.009G056500' => 'pvu', 'Phvul.010G161200' => 'pvu', 'Phvul.011G180500' => 'pvu', 'Potri.001G074700' => 'ptr', 'Potri.002G133800' => 'ptr', 'Potri.003G156500' => 'ptr', 'Potri.003G182300' => 'ptr', 'Potri.006G184700' => 'ptr', 'Potri.008G081000' => 'ptr', 'Potri.008G112300' => 'ptr', 'Potri.010G137300' => 'ptr', 'Potri.010G175300' => 'ptr', 'Potri.014G041700' => 'ptr', 'Potri.018G106900' => 'ptr', 'Pp3c12_4780' => 'ppa', 'Pp3c4_16040' => 'ppa', 'Prupe.1G295200' => 'ppe', 'Prupe.1G382800' => 'ppe', 'Prupe.4G120400' => 'ppe', 'Prupe.4G125700' => 'ppe', 'Prupe.7G262700' => 'ppe', 'Psat0s13g0200' => 'psa', 'Psat0s1938g0040' => 'psa', 'Psat0s1938g0080' => 'psa', 'Psat2g087600' => 'psa', 'Psat4g109200' => 'psa', 'Psat4g186760' => 'psa', 'Psat5g018840' => 'psa', 'Psat7g260160' => 'psa', 'PSO017G1129' => 'pso', 'PSO478G2868' => 'pso', 'PSO541G1150' => 'pso', 'PSO541G1937' => 'pso', 'PSO675G6354' => 'pso', 'PSO675G7240' => 'pso', 'QL01p055539' => 'qlo', 'QL02p007552' => 'qlo', 'QL02p093205' => 'qlo', 'QL04p095831' => 'qlo', 'RcHm_v2.0_Chr2g0085681' => 'rch', 'RcHm_v2.0_Chr4g0437191' => 'rch', 'RcHm_v2.0_Chr5g0021771' => 'rch', 'RcHm_v2.0_Chr5g0023071' => 'rch', 'RcHm_v2.0_Chr6g0300571' => 'rch', 'Rhsim01G0033500' => 'rsi', 'Rhsim07G0236300' => 'rsi', 'Rhsim08G0205800' => 'rsi', 'Rhsim12G0070800' => 'rsi', 'Rhsim12G0187300' => 'rsi', 'Rhsim13G0136000' => 'rsi', 'Sabra01G0052800' => 'sbr', 'Sabra02G0104500' => 'sbr', 'Sabra03G0113500' => 'sbr', 'Sabra03G0133200' => 'sbr', 'Sabra06G0140300' => 'sbr', 'Sabra08G0085100' => 'sbr', 'Sabra10G0105900' => 'sbr', 'Sabra10G0135100' => 'sbr', 'Sabra14G0030400' => 'sbr', 'Sabra18G0091100' => 'sbr', 'SalBow1G0050' => 'sbo', 'SalBow2G2958' => 'sbo', 'SalBow7G0081' => 'sbo', 'SalBow8G3030' => 'sbo', 'Sc04g0007300' => 'sci', 'Sc10g0005360' => 'sci', 'Sc10g0005370' => 'sci', 'Sc10g0008420' => 'sci', 'Sc11g0001240' => 'sci', 'Sc26g0003680' => 'sci', 'Sed0005397' => 'sed', 'Sed0011063' => 'sed', 'Sed0014052' => 'sed', 'Sed0017930' => 'sed', 'Sed0018153' => 'sed', 'Sed0019924' => 'sed', 'Sed0022309' => 'sed', 'SEGI_09712' => 'sgi', 'SEGI_18587' => 'sgi', 'SEGI_20725' => 'sgi', 'SEGI_29326' => 'sgi', 'SEGI_31142' => 'sgi', 'SGA_v2.0_scaffold16G07833' => 'sas', 'SGA_v2.0_scaffold26G11299' => 'sas', 'SGA_v2.0_scaffold287G47195' => 'sas', 'SGA_v2.0_scaffold37G14701' => 'sas', 'SGA_v2.0_scaffold423G51454' => 'sas', 'SGA_v2.0_scaffold48G18059' => 'sas', 'SMO118G0511' => 'smo', 'SMO147G0002' => 'smo', 'SMO169G0245' => 'smo', 'Solyc02g082120.3' => 'sly', 'Solyc03g116880.3' => 'sly', 'Solyc04g005260.3' => 'sly', 'Solyc04g079990.4' => 'sly', 'Solyc05g010800.3' => 'sly', 'Solyc10g005210.4' => 'sly', 'Solyc10g018670.1' => 'sly', 'Solyc12g010050.2' => 'sly', 'Sopen00g002410' => 'spe', 'Sopen02g026780' => 'spe', 'Sopen03g035810' => 'spe', 'Sopen04g001240' => 'spe', 'Sopen04g033570' => 'spe', 'Sopen10g001200' => 'spe', 'Sopen12g004930' => 'spe', 'Sp1g12280' => 'spa', 'Sp1g14280' => 'spa', 'Sp2g09490' => 'spa', 'Sp3g10870' => 'spa', 'Sp5g30220' => 'spa', 'Sp5g34910' => 'spa', 'TAR371G0166' => 'tar', 'TAR376G0103' => 'tar', 'TAR383G1007' => 'tar', 'TAR624G0095' => 'tar', 'TAR624G0210' => 'tar', 'TAR625G1502' => 'tar', 'TAR626G0040' => 'tar', 'TAR626G0218' => 'tar', 'TAR629G2116' => 'tar', 'TAR636G2904' => 'tar', 'THA.LOC104805218' => 'tha', 'THA.LOC104808178' => 'tha', 'THA.LOC104811835' => 'tha', 'THA.LOC104811922' => 'tha', 'THA.LOC104813844' => 'tha', 'THA.LOC104816138' => 'tha', 'Thecc.02G001400' => 'tca', 'Thecc.02G321200' => 'tca', 'Thecc.06G041400' => 'tca', 'Thecc.07G190100' => 'tca', 'Thecc.08G022900' => 'tca', 'Thecc.09G031000' => 'tca', 'Thhalv10000945m.g' => 'esa', 'Thhalv10008041m.g' => 'esa', 'Thhalv10008250m.g' => 'esa', 'Thhalv10018764m.g' => 'esa', 'Thhalv10018831m.g' => 'esa', 'Thhalv10021188m.g' => 'esa', 'TPR.G14376' => 'tpr', 'TPR.G23086' => 'tpr', 'TPR.G24872' => 'tpr', 'TPR.G30146' => 'tpr', 'TPR.G3620' => 'tpr', 'TPR.G572' => 'tpr', 'TWI15G0811' => 'twi', 'TWI18G0688' => 'twi', 'TWI31G1412' => 'twi', 'TWI32G0435' => 'twi', 'TWI34G1840' => 'twi', 'TWI38G0171' => 'twi', 'TWI38G1290' => 'twi', 'TWI38G1343' => 'twi', 'TWI56G1237' => 'twi', 'TWI63G0458' => 'twi', 'unitig_62.g23828' => 'ugi', 'unitig_699.g19821' => 'ugi', 'unitig_747.g21307' => 'ugi', 'vmacro01294' => 'vma', 'vmacro03571' => 'vma', 'vmacro04510' => 'vma', 'vmacro16854' => 'vma', 'vmacro19056' => 'vma', 'VMungo0331G1125' => 'vmu', 'VMungo1080G1795' => 'vmu', 'VMungo1080G1839' => 'vmu', 'VMungo1127G0371' => 'vmu', 'VMungo1215G0880' => 'vmu', 'VMungo1215G1256' => 'vmu', 'VMungo1215G1885' => 'vmu', 'VMungo1309G2528' => 'vmu', 'Zm00001eb007940' => 'zma', 'Zm00001eb033650' => 'zma', 'Zm00001eb078190' => 'zma', 'Zm00001eb099620' => 'zma', 'Zm00001eb150740' => 'zma', 'Zm00001eb199280' => 'zma', 'Zm00001eb275040' => 'zma', 'Zm00001eb312970' => 'zma', 'Zm00001eb369520' => 'zma', 'Zm00001eb425930' => 'zma' ) $gf_id = 'HOM05D000853' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000853' ) $data_identifier = 'HOM05D000853' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 27, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 19, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425930' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1